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scib_metrics.benchmark.Benchmarker
scib_metrics.benchmark.BioConservation
scib_metrics.benchmark.BatchCorrection
scib_metrics.isolated_labels
scib_metrics.nmi_ari_cluster_labels_kmeans
scib_metrics.nmi_ari_cluster_labels_leiden
scib_metrics.pcr_comparison
scib_metrics.silhouette_label
scib_metrics.silhouette_batch
scib_metrics.bras
scib_metrics.ilisi_knn
scib_metrics.clisi_knn
scib_metrics.kbet
scib_metrics.kbet_per_label
scib_metrics.graph_connectivity
scib_metrics.utils.cdist
scib_metrics.utils.pdist_squareform
scib_metrics.utils.silhouette_samples
scib_metrics.utils.KMeans
scib_metrics.utils.pca
scib_metrics.utils.principal_component_regression
scib_metrics.utils.one_hot
scib_metrics.utils.compute_simpson_index
scib_metrics.utils.convert_knn_graph_to_idx
scib_metrics.utils.check_square
scib_metrics.utils.diffusion_nn
scib_metrics.nearest_neighbors.pynndescent
scib_metrics.nearest_neighbors.jax_approx_min_k
scib_metrics.nearest_neighbors.NeighborsResults
scib_metrics._settings.ScibConfig
Tutorials
Benchmarking lung integration
Benchmarking large-scale integration
Changelog
Using this template
Contributing guide
References
.md
.pdf
Tutorials
Contents
Walkthrough
Tutorials
#
Walkthrough
#
Benchmarking lung integration
Benchmarking large-scale integration
Contents
Walkthrough