Citation

If you use scib-metrics in your work, please cite

Adam Gayoso, Martin Kim, Ori Kronfeld, Justin Hong & Nir Yosef

YosefLab/scib-metrics (2026). Zenodo. doi: 10.5281/zenodo.18504367.

along with the original single-cell integration benchmarking work:

Benchmarking atlas-level data integration in single-cell genomics

Malte D. Luecken, Maren Büttner, Kridsadakorn Chaichoompu, Anna Danese, Marta Interlandi, Michaela F. Müller, Daniel C. Strobl, Luke Zappia, Martin Dugas, Maria Colomé-Tatché & Fabian J. Theis

Nature Methods 2022 Jan. doi: 10.1038/s41592-021-01336-8.

You can cite the scverse publication as follows:

The scverse project provides a computational ecosystem for single-cell omics data analysis

Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, Scverse Community, Bonnie Berger, Dana Pe’er, Aviv Regev, Sarah A. Teichmann, Francesca Finotello, F. Alexander Wolf, Nir Yosef, Oliver Stegle & Fabian J. Theis

Nature Biotechnology 2023 Apr 10. doi: 10.1038/s41587-023-01733-8.