scib_metrics.utils.pdist_squareform

scib_metrics.utils.pdist_squareform(X)

Jax implementation of scipy.spatial.distance.pdist() and scipy.spatial.distance.squareform().

Uses euclidean distance.

Parameters:

X (ndarray) – Array of shape (n_cells, n_features)

Return type:

Array

Returns:

dist Array of shape (n_cells, n_cells)