scib_metrics.graph_connectivity#
- scib_metrics.graph_connectivity(X, labels)[source]#
Quantify the connectivity of the subgraph per cell type label.
- Parameters:
X (
NeighborsResults) – Array of shape (n_cells, n_cells) with non-zero values representing distances to exactly each cell’s k nearest neighbors.labels (
ndarray) – Array of shape (n_cells,) representing label values for each cell.
- Return type: